Product. Data. Science.
03 April 2016
A few months ago, I found myself with a backlog of data that needed preprocessing before I could start really analyzing it. I decided I need some kind of a scheduler to help push my data through the preprocessing efficiently.
In order to build the masks for KlustaKwik, SpikeDetekt2 needs to know the graph of adjacencies between all of the recording sites on a recording array. However, a bad channel for a recording session can drastically change the requirements for a probe geometry.
02 July 2015
We’ve started using KlustaKwik for spike sorting in the lab and I’ve been working on getting a data pipeline going. It’s masked EM algorithm is very clever, taking into account the adjacency matrix of an electrode array to determine whether it should use one, two, or n recording sites when clustering.
I had the opportunity to give a short talk at the Neurodata Without Borders Hackathon on behavioral annotation for neurophysiology data.
18 August 2014
Yesterday, I noticed a comment on Twitter where Erin McKiernan expressed confusion over Elsevier’s Open Access policy:
15 April 2013
Dear Larry Swanson,